A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.
Identifieur interne : 002820 ( Main/Exploration ); précédent : 002819; suivant : 002821A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.
Auteurs : Migun Shakya [États-Unis] ; Neil Gottel ; Hector Castro ; Zamin K. Yang ; Lee Gunter ; Jessy Labbé ; Wellington Muchero ; Gregory Bonito ; Rytas Vilgalys ; Gerald Tuskan ; Mircea Podar ; Christopher W. SchadtSource :
- PloS one [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- Analyse statistique factorielle (MeSH), Arbres (microbiologie), Bactéries (classification), Biodiversité (MeSH), Caroline du Nord (MeSH), Champignons (classification), Données de séquences moléculaires (MeSH), Géographie (MeSH), Microbiologie du sol (MeSH), Microbiote (MeSH), Phylogenèse (MeSH), Populus (microbiologie), Racines de plante (microbiologie), Rhizosphère (MeSH), Saisons (MeSH).
- MESH :
English descriptors
- KwdEn :
- Bacteria (classification), Biodiversity (MeSH), Factor Analysis, Statistical (MeSH), Fungi (classification), Geography (MeSH), Microbiota (MeSH), Molecular Sequence Data (MeSH), North Carolina (MeSH), Phylogeny (MeSH), Plant Roots (microbiology), Populus (microbiology), Rhizosphere (MeSH), Seasons (MeSH), Soil Microbiology (MeSH), Trees (microbiology).
- MESH :
- geographic : North Carolina.
- classification : Bacteria, Fungi.
- microbiology : Plant Roots, Populus, Trees.
- Biodiversity, Factor Analysis, Statistical, Geography, Microbiota, Molecular Sequence Data, Phylogeny, Rhizosphere, Seasons, Soil Microbiology.
Abstract
Bacterial and fungal communities associated with plant roots are central to the host health, survival and growth. However, a robust understanding of the root-microbiome and the factors that drive host associated microbial community structure have remained elusive, especially in mature perennial plants from natural settings. Here, we investigated relationships of bacterial and fungal communities in the rhizosphere and root endosphere of the riparian tree species Populus deltoides, and the influence of soil parameters, environmental properties (host phenotype and aboveground environmental settings), host plant genotype (Simple Sequence Repeat (SSR) markers), season (Spring vs. Fall) and geographic setting (at scales from regional watersheds to local riparian zones) on microbial community structure. Each of the trees sampled displayed unique aspects to its associated community structure with high numbers of Operational Taxonomic Units (OTUs) specific to an individual trees (bacteria >90%, fungi >60%). Over the diverse conditions surveyed only a small number of OTUs were common to all samples within rhizosphere (35 bacterial and 4 fungal) and endosphere (1 bacterial and 1 fungal) microbiomes. As expected, Proteobacteria and Ascomycota were dominant in root communities (>50%) while other higher-level phylogenetic groups (Chytridiomycota, Acidobacteria) displayed greatly reduced abundance in endosphere compared to the rhizosphere. Variance partitioning partially explained differences in microbiome composition between all sampled roots on the basis of seasonal and soil properties (4% to 23%). While most variation remains unattributed, we observed significant differences in the microbiota between watersheds (Tennessee vs. North Carolina) and seasons (Spring vs. Fall). SSR markers clearly delineated two host populations associated with the samples taken in TN vs. NC, but overall host genotypic distances did not have a significant effect on corresponding communities that could be separated from other measured effects.
DOI: 10.1371/journal.pone.0076382
PubMed: 24146861
PubMed Central: PMC3797799
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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However, a robust understanding of the root-microbiome and the factors that drive host associated microbial community structure have remained elusive, especially in mature perennial plants from natural settings. Here, we investigated relationships of bacterial and fungal communities in the rhizosphere and root endosphere of the riparian tree species Populus deltoides, and the influence of soil parameters, environmental properties (host phenotype and aboveground environmental settings), host plant genotype (Simple Sequence Repeat (SSR) markers), season (Spring vs. Fall) and geographic setting (at scales from regional watersheds to local riparian zones) on microbial community structure. Each of the trees sampled displayed unique aspects to its associated community structure with high numbers of Operational Taxonomic Units (OTUs) specific to an individual trees (bacteria >90%, fungi >60%). Over the diverse conditions surveyed only a small number of OTUs were common to all samples within rhizosphere (35 bacterial and 4 fungal) and endosphere (1 bacterial and 1 fungal) microbiomes. As expected, Proteobacteria and Ascomycota were dominant in root communities (>50%) while other higher-level phylogenetic groups (Chytridiomycota, Acidobacteria) displayed greatly reduced abundance in endosphere compared to the rhizosphere. Variance partitioning partially explained differences in microbiome composition between all sampled roots on the basis of seasonal and soil properties (4% to 23%). While most variation remains unattributed, we observed significant differences in the microbiota between watersheds (Tennessee vs. North Carolina) and seasons (Spring vs. Fall). SSR markers clearly delineated two host populations associated with the samples taken in TN vs. NC, but overall host genotypic distances did not have a significant effect on corresponding communities that could be separated from other measured effects. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24146861</PMID><DateCompleted><Year>2014</Year><Month>08</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>8</Volume><Issue>10</Issue><PubDate><Year>2013</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.</ArticleTitle><Pagination><MedlinePgn>e76382</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0076382</ELocationID><Abstract><AbstractText>Bacterial and fungal communities associated with plant roots are central to the host health, survival and growth. However, a robust understanding of the root-microbiome and the factors that drive host associated microbial community structure have remained elusive, especially in mature perennial plants from natural settings. Here, we investigated relationships of bacterial and fungal communities in the rhizosphere and root endosphere of the riparian tree species Populus deltoides, and the influence of soil parameters, environmental properties (host phenotype and aboveground environmental settings), host plant genotype (Simple Sequence Repeat (SSR) markers), season (Spring vs. Fall) and geographic setting (at scales from regional watersheds to local riparian zones) on microbial community structure. Each of the trees sampled displayed unique aspects to its associated community structure with high numbers of Operational Taxonomic Units (OTUs) specific to an individual trees (bacteria >90%, fungi >60%). Over the diverse conditions surveyed only a small number of OTUs were common to all samples within rhizosphere (35 bacterial and 4 fungal) and endosphere (1 bacterial and 1 fungal) microbiomes. As expected, Proteobacteria and Ascomycota were dominant in root communities (>50%) while other higher-level phylogenetic groups (Chytridiomycota, Acidobacteria) displayed greatly reduced abundance in endosphere compared to the rhizosphere. Variance partitioning partially explained differences in microbiome composition between all sampled roots on the basis of seasonal and soil properties (4% to 23%). While most variation remains unattributed, we observed significant differences in the microbiota between watersheds (Tennessee vs. North Carolina) and seasons (Spring vs. Fall). SSR markers clearly delineated two host populations associated with the samples taken in TN vs. NC, but overall host genotypic distances did not have a significant effect on corresponding communities that could be separated from other measured effects. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Shakya</LastName><ForeName>Migun</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America ; Genome Science and Technology Program, University of Tennessee, Knoxville, Tennessee, United States of America.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gottel</LastName><ForeName>Neil</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Castro</LastName><ForeName>Hector</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Zamin K</ForeName><Initials>ZK</Initials></Author><Author ValidYN="Y"><LastName>Gunter</LastName><ForeName>Lee</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Labbé</LastName><ForeName>Jessy</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Muchero</LastName><ForeName>Wellington</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Bonito</LastName><ForeName>Gregory</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Vilgalys</LastName><ForeName>Rytas</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Podar</LastName><ForeName>Mircea</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Schadt</LastName><ForeName>Christopher W</ForeName><Initials>CW</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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MajorTopicYN="N">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005163" MajorTopicYN="N">Factor Analysis, Statistical</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D064307" MajorTopicYN="Y">Microbiota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009657" MajorTopicYN="N" Type="Geographic">North Carolina</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>07</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>08</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>10</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>10</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>8</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24146861</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0076382</ArticleId><ArticleId IdType="pii">PONE-D-13-28933</ArticleId><ArticleId IdType="pmc">PMC3797799</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Plant Signal Behav. 2008 Jul;3(7):482-4</Citation><ArticleIdList><ArticleId IdType="pubmed">19704493</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2006 Jul;72(7):5069-72</Citation><ArticleIdList><ArticleId IdType="pubmed">16820507</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2012 Aug 2;488(7409):86-90</Citation><ArticleIdList><ArticleId IdType="pubmed">22859206</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2012 Jan;14(1):4-12</Citation><ArticleIdList><ArticleId IdType="pubmed">22004523</ArticleId></ArticleIdList></Reference><Reference><Citation>J Hered. 2008 Mar-Apr;99(2):232-6</Citation><ArticleIdList><ArticleId IdType="pubmed">18222930</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2005 Aug 1;53(3):401-15</Citation><ArticleIdList><ArticleId IdType="pubmed">16329959</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2009 Feb;75(3):748-57</Citation><ArticleIdList><ArticleId IdType="pubmed">19060168</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2012 Jun 22;336(6088):1576-7</Citation><ArticleIdList><ArticleId IdType="pubmed">22723421</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2008 Feb;10(2):534-41</Citation><ArticleIdList><ArticleId IdType="pubmed">18081854</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2013 Jun;15(6):1882-99</Citation><ArticleIdList><ArticleId IdType="pubmed">23387867</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2013;14(6):209</Citation><ArticleIdList><ArticleId IdType="pubmed">23805896</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(4):e33819</Citation><ArticleIdList><ArticleId IdType="pubmed">22529898</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2012 Aug;17(8):478-86</Citation><ArticleIdList><ArticleId IdType="pubmed">22564542</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2011;12:38</Citation><ArticleIdList><ArticleId IdType="pubmed">21276213</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2001 Oct;67(10):4742-51</Citation><ArticleIdList><ArticleId IdType="pubmed">11571180</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2011 Aug 15;27(16):2194-200</Citation><ArticleIdList><ArticleId IdType="pubmed">21700674</ArticleId></ArticleIdList></Reference><Reference><Citation>ISME J. 2012 Aug;6(8):1621-4</Citation><ArticleIdList><ArticleId IdType="pubmed">22402401</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2007 Oct 18;449(7164):804-10</Citation><ArticleIdList><ArticleId IdType="pubmed">17943116</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Nov;71(11):6673-9</Citation><ArticleIdList><ArticleId IdType="pubmed">16269696</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2008 Apr;64(1):78-89</Citation><ArticleIdList><ArticleId IdType="pubmed">18312375</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2011 Mar;21(3):494-504</Citation><ArticleIdList><ArticleId IdType="pubmed">21212162</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Microbiol. 2009;63:363-83</Citation><ArticleIdList><ArticleId IdType="pubmed">19514845</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2010;5(3):e9490</Citation><ArticleIdList><ArticleId IdType="pubmed">20224823</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecol Lett. 2007 Jun;10(6):470-80</Citation><ArticleIdList><ArticleId IdType="pubmed">17498146</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2009 Aug;75(15):5111-20</Citation><ArticleIdList><ArticleId IdType="pubmed">19502440</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Jan 15;26(2):266-7</Citation><ArticleIdList><ArticleId IdType="pubmed">19914921</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2010 May;7(5):335-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20383131</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2008 Feb;74(3):738-44</Citation><ArticleIdList><ArticleId IdType="pubmed">18083870</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecol Evol. 2012 Aug;2(8):1935-48</Citation><ArticleIdList><ArticleId IdType="pubmed">22957194</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2011 Sep;77(17):5934-44</Citation><ArticleIdList><ArticleId IdType="pubmed">21764952</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2012 Mar;78(5):1523-33</Citation><ArticleIdList><ArticleId IdType="pubmed">22194300</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2009;182(2):314-30</Citation><ArticleIdList><ArticleId IdType="pubmed">19236579</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Biosafety Res. 2010 Jan-Mar;9(1):25-40</Citation><ArticleIdList><ArticleId IdType="pubmed">21122484</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Dec;71(12):8228-35</Citation><ArticleIdList><ArticleId IdType="pubmed">16332807</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Rev. 2013 Sep;37(5):634-63</Citation><ArticleIdList><ArticleId IdType="pubmed">23790204</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Rev. 2005 Sep;29(4):795-811</Citation><ArticleIdList><ArticleId IdType="pubmed">16102603</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2012 Aug 2;488(7409):91-5</Citation><ArticleIdList><ArticleId IdType="pubmed">22859207</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Oct 1;26(19):2460-1</Citation><ArticleIdList><ArticleId IdType="pubmed">20709691</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2009 Dec;75(23):7537-41</Citation><ArticleIdList><ArticleId IdType="pubmed">19801464</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2012 May;14(5):1091-117</Citation><ArticleIdList><ArticleId IdType="pubmed">22026719</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2012 Feb;14(2):285-90</Citation><ArticleIdList><ArticleId IdType="pubmed">21923700</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2012 Jun;25(6):765-78</Citation><ArticleIdList><ArticleId IdType="pubmed">22375709</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Appl Microbiol. 2006 Nov;29(7):539-56</Citation><ArticleIdList><ArticleId IdType="pubmed">16919907</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2009 Jun;75(12):3859-65</Citation><ArticleIdList><ArticleId IdType="pubmed">19376893</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2011 Sep;77(3):600-10</Citation><ArticleIdList><ArticleId IdType="pubmed">21658090</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Tennessee</li></region></list><tree><noCountry><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><name sortKey="Castro, Hector" sort="Castro, Hector" uniqKey="Castro H" first="Hector" last="Castro">Hector Castro</name><name sortKey="Gottel, Neil" sort="Gottel, Neil" uniqKey="Gottel N" first="Neil" last="Gottel">Neil Gottel</name><name sortKey="Gunter, Lee" sort="Gunter, Lee" uniqKey="Gunter L" first="Lee" 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